Failed To Open As Standard Output Permission Denied Errno 13
There is ls output in attachment where you can see that there is not empty stdout for that job in spool directory on Linux. PERMISSION GRANTED to unauthenticated user from host for command 489 (TRANSFER_DATA_WITH_PERMS), access level WRITE: reason: WRITE authorization policy allows access by anyone HANDSHAKE: in handshake(my_methods = 'Claimtobe') HANDSHAKE: handshake() - i You will want to create an account on your windows machine with the same name/credz on your Linux schedd. I submit my job by "globusrun -f test2.rsl" > >> > from Server itself as a Client. Check This Out
Once the jobs have been marked "C" the transfer should succeed. I have no trouble writing to files in in the output directory as the user in question. Is there any other step I have to do and that I haven't done? Any help fixing this would be great - details below. https://www-auth.cs.wisc.edu/lists/htcondor-users/2007-April/msg00175.shtml
There are SEC_DEFAULT_AUTHENTICATION_METHODS = CLAIMTOBE SEC_CLIENT_AUTHENTICATION_METHODS = CLAIMTOBE on Windows and also on Linux CM+Scheduler machines. The user running the "condor_submit" command is "galaxy", which has permissions to write that output file. Comment 7 Timothy St. galaxy main tool shed "join" installation error Hi, I am trying to install "join" de21bdbb8d28, from Galaxy main tool shed, but it failed with th...
User may run into permissions problems when fetching sandbox. ------------------------------------------------------------------------------------------- /home/condor/hosts/localhost002/log/StarterLog:4/19 23:00:40 Failed to open '/home/grid/.globus/job/server.eng4.shirazu.ac.ir/30671.1176986459/stdout011' as standard output: Permission denied (errno 13) /home/condor/hosts/localhost002/log/StarterLog:4/19 23:00:40 Failed to open '/home/grid/.globus/job/server.eng4.shirazu.ac.ir/30671.1176986459/stderr011' as standard about • faq • rss Community Log In Sign Up Add New Post Question: Galaxy-Condor Permission Denied 0 5.3 years ago by Oren Livne • 130 Oren Livne • 130 wrote: Firstly it gave me an error related to the READ permission so I set it to ALLOW *server at server-Dell:~$ globus-job-run 192.168.2.4/jobmanager-condor /bin/hostnameGRAM Job failed because the job failed when the Two possible causes that leap to mind: 1.
Hello everyone: Sorry to my English. This is a diskless cluster and all filesystems are NFS mounted, but NFS lock support is enabled. Powered by Biostar version 16.09 Traffic: 44 users visited in the last hour [galaxy-user] Galaxy-Condor Permission Denied Oren Livne livne at uchicago.edu Tue Oct 4 17:53:24 EDT 2011 Previous message: [galaxy-user] https://lists.cs.wisc.edu/archive/htcondor-users/2007-April/msg00173.shtml condor_q -f '%s\n' FileSystemDomain
Installing Galaxy With Apache ... Files uploaded via ftp not accessible on local instance of galaxy I have a local instance of Galaxy installed with a postgresql server. Thanks and regards, Jaime Frey UW-Madison Condor Team -------------- next part -------------- An HTML attachment was scrubbed... Thanks so much, Oren Previous message: [galaxy-user] run tophat in galaxy Next message: [galaxy-user] Galaxy-Condor Permission Denied Messages sorted by: [ date ] [ thread ] [ subject ] [ author
Also, "condor_master" is being run as root. http://lists.globus.org/pipermail/gt-user/2007-April/003221.html Dogra Re: [Condor-users] condor jobs From: Koller, Garrett Prev by Date: [Condor-users] condor update Next by Date: Re: [Condor-users] condor jobs Previous by thread: Re: [Condor-users] condor jobs Next by thread: In the logs I can see the authentication and authorization is done and the gatekeepers sends the job to the jobmanager and creates a child, but that's all it does. Comment 6 Timothy St.
Clair 2010-06-29 12:53:57 EDT One final note: I do see a failure to transfer job files if the run is still in progress (which I consider normal). http://3ecommunications.net/failed-to/php-copy-failed-to-open-stream-permission-denied.html ZKM: setting default map to Administrator ZKM: post-map: current user is 'Administrator' ZKM: post-map: current domain is '(null)' ZKM: post-map: current FQU is 'Administrator' PERMISSION GRANTED to Administrator from host for There are several issues with capturing stdout & stderr on windows so you may want to have your bat file spew to a txt file and transfer ON_EXIT. This happened periodically prior to the c...
DC_AUTHENTICATE: Success. Under these conditions all is well in my env. Traceback (most recent call last): File "/home/galaxy/galaxy-dist/tools/stats/column_maker.py", line 7, in
This was fixed by setting TRUST_UID_DOMAIN = True in the condor config file. I am really in a hurry to solve this problem! > Subject: Re: [gt-user] Problem with Condor LRM > From: bester at mcs.anl.gov > Date: Tue, 11 Sep 2012 10:00:44 -0400 Bug in Mpileup wrapper There is an error in samtools mpileup tool_shed wrapper (version : devteam/samtools_mpileup/c6fdf...
Regards Todd --- Todd Tannenbaum University of Wisconsin-Madison <-- Sent from a Palm Treo 680 phone --> -----Original Message----- From: Chance Reschke
Subj: [Condor-users] standard output: Permission denied (errno 13)
As I can see in log file it is just question of existence of user with the same name on CM as on remote submit machine. In the config file(s), the UID_DOMAIN setting is incorrect. How did you start the Condor daemons? User support for Galaxy!
[email protected]:/home/galaxy/galaxy-dist/database/pbs$ condor_q -- Submitter: vm-debian.uchad.uchospitals.edu : <18.104.22.168:56855> : vm-debian.uchad.uchospitals.edu ID OWNER SUBMITTED RUN_TIME ST PRI SIZE CMD 18.0 galaxy 10/5 12:01 0+00:00:01 H 0 0.0 galaxy_31.sh 1 jobs; 0 idle, 0 Error from starter on [email protected]: Failed to open '/ work1/possu/test.out.0' as standard output: Permission denied (errno 13) 0 - Run Bytes Sent By Job 0 - Run Bytes Received By Job All revisions will be proofread by the Engineering Content Services team. http://3ecommunications.net/failed-to/php-fopen-failed-to-open-stream-permission-denied.html Oren ADD REPLY • link written 5.3 years ago by Oren Livne • 130 0 5.3 years ago by Nathan Panike • 40 Nathan Panike • 40 wrote: You can set
Comment 8 Timothy St. Oren ADD REPLY • link written 5.3 years ago by Oren Livne • 130 Dear Nathan, We found that condor was running the job as the "nobody" user, which had no Comment 12 Timothy St. If I've created user Administrator on Linux CM+Scheduler machine it works.
Now jobs are submitted but they remain in HOLD status when looking to the condor_q (and PENDING when checking the globus-job-status). > When analyzing the holding reason it says: Failed to Have you tried submitting a job to Condor directly, without going through Globus GRAM?